Scaffold Ga0137394_10000149

Overview

Basic Information

• Taxon OID: 3300012922
• Scaffold ID: Ga0137394_10000149
• Source Dataset Name: Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk1.16 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 47886
• Total Scaffold Genes: 49
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 32 (65.31%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil → Vadose Zone Soil And Rhizosphere Microbial Communities From The Eel River Critical Zone Observatory, Northern California To Study Diel Carbon Cycling

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 39.7291
  • Long. (^o): -123.6419

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000678	Metagenome / Metatranscriptome	940	Y
F003414	Metagenome / Metatranscriptome	488	Y
F003732	Metagenome / Metatranscriptome	471	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0137394_1000014931	F003414	GGTGG	MRKRPAIPWATAVQVKPVSQPRTVEINSVPDDLLPELPLELPPFPGHLTTVRTAPPRPRVSASPSAATGTEAEKLEAPVIAPQLTPQESAVAQQQTNQSLGIAEKNLEAARGKNLNAAQADLVSKIRGFIKDAREAAQITDWSRARSLAKKAQVLSEELSSSL*
Ga0137394_1000014942	F003732	N/A	MAMSMKEKLLFVWLLVVVACGLVFRHFWASTVYALGRVVALNLVSLPGLAKLAVGIFGVHLLP*
Ga0137394_100001499	F000678	GAGG	MDKFEEFGKRIDEEFARVKSIKNFEDFGKRVDEELARVKSFVKEEVATETEKRTAQFLREVSEKLTEAAAWIEARDAACNAQANQHPSAAQPPQNPPSS*