Scaffold Ga0160423_10368516

Overview

Basic Information

• Taxon OID: 3300012920
• Scaffold ID: Ga0160423_10368516
• Source Dataset Name: Marine microbial communities from the Costa Rica Dome - CRUD Field 142mm St8 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 984
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Photic Zone → Surface Seawater → Marine Microbial Communities From The Costa Rica Dome And Surrounding Waters

Source Dataset Sampling Location

• Location Name: Costa Rica: the Eastern Pacific
• Coordinates
  • Lat. (^o): 8.7051
  • Long. (^o): -86.4906
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002928	Metagenome	520	Y
F006282	Metagenome / Metatranscriptome	377	Y
F087046	Metagenome	110	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0160423_103685162	F002928	GAGG	MKKYLVRFECVIGDYEHLDYYIFDKKKSEWGYCKEFWGINKRDNSCLSDNQFWDNHSQNAISVYSETELTQQEADTLQRLGVA*
Ga0160423_103685163	F006282	AGAAGG	MTENETLKNRLAELSKQNTLLADHLASMCCQADEDTPSEYRTRHFRNTMDGAYEYLEKINYFKRDK*
Ga0160423_103685164	F087046	N/A	YNYTLEELPELKNRFEASVNEFESLYEQAVIFKKAQADLKKLSKDDWYKKYVNDGDHWVEDAMIYELAEEHYNEQASEQKG*