Scaffold Ga0160423_10285179

Overview

Basic Information

• Taxon OID: 3300012920
• Scaffold ID: Ga0160423_10285179
• Source Dataset Name: Marine microbial communities from the Costa Rica Dome - CRUD Field 142mm St8 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1138
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Photic Zone → Surface Seawater → Marine Microbial Communities From The Costa Rica Dome And Surrounding Waters

Source Dataset Sampling Location

• Location Name: Costa Rica: the Eastern Pacific
• Coordinates
  • Lat. (^o): 8.7051
  • Long. (^o): -86.4906
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F024547	Metagenome / Metatranscriptome	205	Y
F025719	Metagenome / Metatranscriptome	200	N
F062823	Metagenome	130	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0160423_102851791	F024547	AGGA	METQKDNNDYTRRNRFTGESIELTKEEAEKHDDIFKYEVLATLEDKE
Ga0160423_102851793	F062823	GGAG	MVELFNLIFVESPIGLSIILIVGIIAIGIEGYRSS*
Ga0160423_102851794	F025719	N/A	LTIKGISYNIPFINRKDTMKETNAQTVIEKLKEAVYFSICYKPKKYNGKPIYRNAKWDDKCKIGNGYIIYYDRDRGGYRCASGESAISLQRGELSNG*