Scaffold Ga0160423_10139902

Overview

Basic Information

• Taxon OID: 3300012920
• Scaffold ID: Ga0160423_10139902
• Source Dataset Name: Marine microbial communities from the Costa Rica Dome - CRUD Field 142mm St8 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1701
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (28.57%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Photic Zone → Surface Seawater → Marine Microbial Communities From The Costa Rica Dome And Surrounding Waters

Source Dataset Sampling Location

• Location Name: Costa Rica: the Eastern Pacific
• Coordinates
  • Lat. (^o): 8.7051
  • Long. (^o): -86.4906
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F038711	Metagenome	165	N
F084339	Metagenome	112	Y
F092193	Metagenome	107	N
F101312	Metagenome	102	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0160423_101399022	F101312	GGA	MKDLTKELSKESTAKLEAAIAAGATHARFTYADGSYHPYPIREINRGMNAHRRSRLGLELVKVVSTEEKLESLPFWNSFVDDREINPN*
Ga0160423_101399023	F092193	N/A	MKNIDATLDTDEKYMTIDGVLHSVIDHRSFDDFGGTLESFKVMDVMANVRVVYSNDDALTFFEDEFAPDYA*
Ga0160423_101399026	F084339	N/A	MKDNKENPNEFKSNFHEWLAEMNRRREINRKRDEEQAYWNQPLDTKDRD*
Ga0160423_101399027	F038711	GGA	MKNEEMQLVNDNGTWKIKWNDGFEREFDSFFKAKLHFVALVNQQIAMER*