Basic Information | |
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Taxon OID | 3300012920 Open in IMG/M |
Scaffold ID | Ga0160423_10088584 Open in IMG/M |
Source Dataset Name | Marine microbial communities from the Costa Rica Dome - CRUD Field 142mm St8 metaG |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 2198 |
Total Scaffold Genes | 6 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 1 (16.67%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
Associated Families | 3 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Oceanic → Photic Zone → Surface Seawater → Marine Microbial Communities From The Costa Rica Dome And Surrounding Waters |
Source Dataset Sampling Location | ||||||||
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Location Name | Costa Rica: the Eastern Pacific | |||||||
Coordinates | Lat. (o) | 8.7051 | Long. (o) | -86.4906 | Alt. (m) | Depth (m) | 5 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F010128 | Metagenome / Metatranscriptome | 308 | Y |
F057372 | Metagenome / Metatranscriptome | 136 | Y |
F069999 | Metagenome | 123 | Y |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0160423_100885843 | F010128 | N/A | MAKDNPTKPGGMRRMDELVALRNVFGNDSVLLEELVRVMSNRDANQFFRRVAKSFDVTGALNRELDTINQR* |
Ga0160423_100885844 | F069999 | N/A | MSLLNDLLPEVREQLEADKEQYPFLYKSIIADIQGAQLSTDVKVSTANTLIGYAEVAKVEFESDSFVLKLYNVFGK* |
Ga0160423_100885846 | F057372 | N/A | MNKHELTDVLLEMTEHAGVELILEELIQCMSQDELHENVKHLDQHLFENHFLTRED* |
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