Scaffold Ga0160423_10085576

Overview

Basic Information

• Taxon OID: 3300012920
• Scaffold ID: Ga0160423_10085576
• Source Dataset Name: Marine microbial communities from the Costa Rica Dome - CRUD Field 142mm St8 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2240
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (57.14%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → unclassified Rhodospirillaceae → Rhodospirillaceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Photic Zone → Surface Seawater → Marine Microbial Communities From The Costa Rica Dome And Surrounding Waters

Source Dataset Sampling Location

• Location Name: Costa Rica: the Eastern Pacific
• Coordinates
  • Lat. (^o): 8.7051
  • Long. (^o): -86.4906
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001839	Metagenome	628	Y
F004990	Metagenome	416	Y
F008915	Metagenome / Metatranscriptome	326	Y
F011253	Metagenome	293	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0160423_100855762	F011253	AGG	MKDRKLEINNIIKNIVKNKSIPYVNAISKIKQDRKGYFQQKEIKNKQKSLSTDRFQQYLKDIAENDTE*
Ga0160423_100855763	F001839	GAG	MKYFEKINKDLLNNRFLNSHEKLIYIICKSFENAPRGARVSHKYLMQRTGIKTKKTLIKCLDNLALFGLMARKQIGQGTCHYVFDKQTMQEYIRHNINKRKKISLQKNRQFKSYMNNLNNPQVININKFIKE*
Ga0160423_100855765	F004990	N/A	MELDMYGDPKKPCKICGEGADIKEGSIYYCCDHYALYVLGKSMEQIEKELNEIK*
Ga0160423_100855766	F008915	AGGGGG	MNNEITLDLYEMQSASHLGILRCLESKKHKENWGHDYKGSFNDQIAKSISGAMGEVAASKFLNIKFEYHCNVGGVPDLIFKDLRLQVRTQLKKNNNTLIIRPKAKPNELYILVIDEAPKFKILGFVNSNYVLGQNKFKTNFGLDRPFCYSIPPEKLTPIYLLKNGTWN*