Scaffold Ga0160423_10059901

Overview

Basic Information

• Taxon OID: 3300012920
• Scaffold ID: Ga0160423_10059901
• Source Dataset Name: Marine microbial communities from the Costa Rica Dome - CRUD Field 142mm St8 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2743
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (69.23%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Photic Zone → Surface Seawater → Marine Microbial Communities From The Costa Rica Dome And Surrounding Waters

Source Dataset Sampling Location

• Location Name: Costa Rica: the Eastern Pacific
• Coordinates
  • Lat. (^o): 8.7051
  • Long. (^o): -86.4906
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F034211	Metagenome	175	N
F037480	Metagenome	168	Y
F052942	Metagenome	142	Y
F054844	Metagenome	139	Y
F099989	Metagenome	103	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0160423_1005990112	F034211	AGGAGG	MAYLKKDDLVIIPSASGANIQARVVDMQFRRFRRTWKDKTTGENKSRWKSVPYAVCECFLGAPIGTEFVIPGYKLKNETKDGEKLLVLRDQYAAEFGGHWIEKMIEDSRAKREVAQ*
Ga0160423_1005990113	F052942	GGAGG	MKVWVMQGIHEGELFSSVHLTEKGAALSAIADVLEFLGV
Ga0160423_100599015	F099989	GGA	MKIGDLVRIKYDGAMALVTHIEDGARPWIYLHTGESFKWDKLELVNESR*
Ga0160423_100599017	F037480	GAGG	MEVGDLVIMPGAIEPATGIVLRVKSDGYQHRLNRVEVYWIEDGEASWGPVKWLEVISSS*
Ga0160423_100599018	F054844	GGAG	VLKTGTLVRWRGSVGLVMGACKKRWAKDDDVWVMWNDEPRPKIESSRLLVVLNASR*