Scaffold Ga0160423_10058082

Overview

Basic Information

• Taxon OID: 3300012920
• Scaffold ID: Ga0160423_10058082
• Source Dataset Name: Marine microbial communities from the Costa Rica Dome - CRUD Field 142mm St8 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2794
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Photic Zone → Surface Seawater → Marine Microbial Communities From The Costa Rica Dome And Surrounding Waters

Source Dataset Sampling Location

• Location Name: Costa Rica: the Eastern Pacific
• Coordinates
  • Lat. (^o): 8.7051
  • Long. (^o): -86.4906
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008105	Metagenome / Metatranscriptome	339	Y
F014794	Metagenome / Metatranscriptome	260	Y
F018622	Metagenome	234	Y
F018815	Metagenome	233	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0160423_100580823	F008105	N/A	MNFFQLQNKLFYSKKDNAGVLDSEGEQAFVPFLFNRWLSFYNKELPGFVNETLNKFGGIFDDKQEVYKLYYYLIPRLKWQRISYIKKKKKEDEDIEGLNTIAKNKNISKRELQQYVELEKILRK*
Ga0160423_100580824	F014794	N/A	MAMASIDNLAPTRSLIDLTQKDKGDFGLDDYDLDFIFDDILLVEYVDETDNGDEVIRNGIVVPTNALTKAWRKGRVVLAGPDTKHAKIDDIVIFPNNMGVTISNITISGGRKVGKAIFLNEERMFGICKPKDDSTKSNS*
Ga0160423_100580825	F018622	N/A	MIVQKATLDSLLSNNVLEIRFPRRIVKPGLAATRRMLCTNSLDLLNSVNGRISLNYFTPKGPRKPYLGPDNLSVAWDIIMQDYRNINCNQVDVIQEIPADEDFWIYFNENIYPLSQQQKFNFMNS*
Ga0160423_100580826	F018815	N/A	MNVSLEKVSNFLKPFLLQDIVIRTNKKVLKKGKFKIFQVKQYYINLTLEINGSNKNYEIPYPFKMDYDDGKGVLNYHLSSFIPINQMTRVKFLDSSSKSKLYDNLVFILPSDGTTLK*