Scaffold Ga0160423_10057975

Overview

Basic Information

• Taxon OID: 3300012920
• Scaffold ID: Ga0160423_10057975
• Source Dataset Name: Marine microbial communities from the Costa Rica Dome - CRUD Field 142mm St8 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2797
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (16.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Photic Zone → Surface Seawater → Marine Microbial Communities From The Costa Rica Dome And Surrounding Waters

Source Dataset Sampling Location

• Location Name: Costa Rica: the Eastern Pacific
• Coordinates
  • Lat. (^o): 8.7051
  • Long. (^o): -86.4906
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F026716	Metagenome	197	Y
F030564	Metagenome	185	Y
F066235	Metagenome	127	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0160423_100579751	F030564	N/A	MISLPEDFVILKFYELGFYPKYNKFNNVYQCSCPICREGNSLGKKRRCYYIPKNENIFCHNCGWSGKPLRWIKEVSNCSDTEVINELKEYVPDAQDIIVNREQARPTIQVETLPKDSINLSDEFQLDYYSSNSVVTAVRYLVKDRRLDTAVNRPNNLYVSLTDRVHRNRLVIPFINENKEIEFYQTRTVLSKDNKTKPKYLGKVQAEKTLFNIDRVS
Ga0160423_100579753	F026716	AGGTGG	MNCSKKQIYAVETGDYVGQMFAIVEVNKDHIGCLSLPEMENVKVPKESFDSGRNNDILSLVEELPKDVFKVVESQYFKNENSDNRRQQLNTPNVLYSKESSEEE*
Ga0160423_100579754	F066235	N/A	MEEEDHNSPEDEELREMIERALKDNLKERKSFRKRKDLANRLANILTEYLDSYILLGYDFSGRHLDIKAASTPQQQEALNSFLMKYFASEMQSIKGGTDELL*