Basic Information | |
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Taxon OID | 3300012920 Open in IMG/M |
Scaffold ID | Ga0160423_10051843 Open in IMG/M |
Source Dataset Name | Marine microbial communities from the Costa Rica Dome - CRUD Field 142mm St8 metaG |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 2979 |
Total Scaffold Genes | 5 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 3 (60.00%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (100.00%) |
Associated Families | 3 |
Taxonomy | |
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All Organisms → Viruses → Predicted Viral | (Source: DeepVirFinder) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Oceanic → Photic Zone → Surface Seawater → Marine Microbial Communities From The Costa Rica Dome And Surrounding Waters |
Source Dataset Sampling Location | ||||||||
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Location Name | Costa Rica: the Eastern Pacific | |||||||
Coordinates | Lat. (o) | 8.7051 | Long. (o) | -86.4906 | Alt. (m) | Depth (m) | 5 | Location on Map |
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Family | Category | Number of Sequences | 3D Structure? |
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F003693 | Metagenome / Metatranscriptome | 473 | Y |
F039872 | Metagenome | 163 | Y |
F092017 | Metagenome / Metatranscriptome | 107 | N |
Protein ID | Family | RBS | Sequence |
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Ga0160423_100518432 | F003693 | AGG | MISKTALIDISADASNSLGVETEGMLLCGIQFPAAMTGTSITFDFALDNTTWADVLETDGTAVSYSVSAGDVVRVDPSGWAFSSNGYIRLTSNGTEAADRKIILHFRNS* |
Ga0160423_100518433 | F092017 | AGGAG | MGMLLMLKEGRNLNIESIPDQPLEPSFPIVNPNNNANDGWFGLGAFGQAVFASELVEEGAA* |
Ga0160423_100518434 | F039872 | AGAAGG | MSTTIGDLVDRVYREYLEPMDDLTSYTTLNEGGTLSAVSTTINFNGDLLTQEEEDAMDAGTIIEVGTELMRCVSLDTVNNAVTVVRGVRGTTATTHDDGSLVKIAPPFPRKVVFDAVKDQINNLFPTLFAVDTQSVTSATGYVLLGDYSSPGTHNYIVSVIKAISQYTDFSSGSDTTGVVFNGVSCQLVELPNPFTYTDDSGTERTITYSTGPSVVNALQFTNISAGHECFVTFKKKFIEPTAESDTLTSIGLENEYEPVIMAGVAAQMMSGRDIPTATADYITDQMSVQNFPAGSANSIRNSLLQYRNLLIEQARKYLRSKYPEAISVNDITVTVQ* |
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