Scaffold Ga0160423_10051729

Overview

Basic Information

• Taxon OID: 3300012920
• Scaffold ID: Ga0160423_10051729
• Source Dataset Name: Marine microbial communities from the Costa Rica Dome - CRUD Field 142mm St8 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2982
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (12.50%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Photic Zone → Surface Seawater → Marine Microbial Communities From The Costa Rica Dome And Surrounding Waters

Source Dataset Sampling Location

• Location Name: Costa Rica: the Eastern Pacific
• Coordinates
  • Lat. (^o): 8.7051
  • Long. (^o): -86.4906
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F033757	Metagenome / Metatranscriptome	176	Y
F081205	Metagenome	114	Y
F097128	Metagenome	104	N
F104969	Metagenome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0160423_100517291	F104969	N/A	MKNKKEREILSIEILYDDKEELNELVDSEDFNRLMFEEAIATIKNAINKQRETARMFYIPNLDCSVLLEQRNFKKVIDTAIKFYEQQEEYDKCAELVTLKKKIDGSKKRDKRST*
Ga0160423_100517292	F097128	N/A	MDQRKEIKEALEQILGSSVTMRDDGSDPVDELKNDFVKLIDLFENVWKRQNDLLEVQGLDFTSYDEDYFRLVEGFIHFCFETVAADAILFYIYSRKDEDGTLHPFLDSKGQEHKFETVDDLWEFLLYWAEEMIRP*
Ga0160423_100517295	F033757	N/A	VVYVKKITVNNYDEFLKMALYQKFTMAQDIVETVLENLNTRKKEIPVFEIEVESEDSIYTLSVQKDEFIEILKTNLIHFENEEAYEGCQKIIEAINYLKTKNG*
Ga0160423_100517297	F081205	GAGG	MSKNSNKQRYDQLKEWDRWMQNEYPNYKERKKKVKFKAPSYFKPEDEDLQDYYDGKF*