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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300012920 Open in IMG/M |
| Scaffold ID | Ga0160423_10034140 Open in IMG/M |
| Source Dataset Name | Marine microbial communities from the Costa Rica Dome - CRUD Field 142mm St8 metaG |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 3752 |
| Total Scaffold Genes | 12 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 8 (66.67%) |
| Novel Protein Genes | 4 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (100.00%) |
| Associated Families | 4 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp. | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Oceanic → Photic Zone → Surface Seawater → Marine Microbial Communities From The Costa Rica Dome And Surrounding Waters |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Costa Rica: the Eastern Pacific | |||||||
| Coordinates | Lat. (o) | 8.7051 | Long. (o) | -86.4906 | Alt. (m) | Depth (m) | 5 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F028777 | Metagenome / Metatranscriptome | 190 | Y |
| F035554 | Metagenome / Metatranscriptome | 172 | N |
| F039398 | Metagenome / Metatranscriptome | 164 | N |
| F057387 | Metagenome / Metatranscriptome | 136 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0160423_1003414011 | F039398 | GAGG | MEYAADDINIGYMTCLMFINNEKTLVDKLNNITELNPIDHQGGVSFELVLKSLPTYVEITMNHNGNFDIYTKTAKGETEFKDEIAETLINFLHLFYVNMVDDENKLLMNALDKTTYRKIAKRMHYRENFGNDLSGD* |
| Ga0160423_100341405 | F035554 | GGAGG | MAAKFLEDYVGVDDLIKQMNEQYPEGRLVSEIVEKTDKMVVFKTSFYIKDNVSPKCTGHGSKYSTEDHWLEKAEQKSRGRCLRVLLGSEPTAEEMEGIVPSKSATPKKKSLDEKVKDLEAEGLVEDITDKTQAIMDNIKHFAMEITKQDLDLARNYTAQALGAMGINKTEVSINNLQSVKNKIQDIATLARTEIDKGE* |
| Ga0160423_100341406 | F028777 | AGGGGG | MLGLFGRNKPLSTVEILSLEKDISEARKIRYILEVEGKICSLDPEFSASGNLRKVVYRLNNYYNSGIYKEECHCDFKQKAKLNLDGTPRKHFAYKKDWAL* |
| Ga0160423_100341408 | F057387 | GGA | MSKLSKPLQVFWNNQIANKNVKAAPFSGNCMFCNKAITDTDEDHSVCDTCWAKLGNDD* |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |