Scaffold Ga0160423_10028902

Overview

Basic Information

• Taxon OID: 3300012920
• Scaffold ID: Ga0160423_10028902
• Source Dataset Name: Marine microbial communities from the Costa Rica Dome - CRUD Field 142mm St8 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4119
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (15.38%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Photic Zone → Surface Seawater → Marine Microbial Communities From The Costa Rica Dome And Surrounding Waters

Source Dataset Sampling Location

• Location Name: Costa Rica: the Eastern Pacific
• Coordinates
  • Lat. (^o): 8.7051
  • Long. (^o): -86.4906
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008022	Metagenome	340	Y
F011658	Metagenome / Metatranscriptome	288	Y
F039092	Metagenome	164	Y
F059877	Metagenome	133	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0160423_1002890212	F059877	N/A	MIKSKFIASAVAATLALTSCEKTDYDVQFDRDTHVKIMSENSVSTYAVSTCTGNDTSFVVDFGVAMCINVANLPGIDDVRYDEYEFYAMLDGRKVKGFQNLKDQVSKVSQGIIEGNINMQLSGHDDLAVYLLHENMYKAQFFVENGDGQIFELQLKEVY*
Ga0160423_1002890213	F039092	N/A	MTITIKQVGKTYKVSNDNTVEVTHDHEAIVSVCGEYYKNKYTGEWLSELEAEQAMIDRYEEDESNKYY*
Ga0160423_100289024	F011658	N/A	METLWQQLKPEIKQALKEQEEKYPSLIKGIKISLKDNYLWSHLTIGQARDLVYFTDISLASLSSYDWSYGEKFIGIQLQNES*
Ga0160423_100289025	F008022	N/A	MNKVELEAKIEALQTALETKVQEQNAYRGQIDTLTKQLADLNKPKLTGEQFDELREAIEEGIGNFDFDDQDNYSIDFGIDYDNRINCESFCFDNADDLVHEIYEYVAALFTEAEDNNQENQD*