Scaffold Ga0160423_10026465

Overview

Basic Information

• Taxon OID: 3300012920
• Scaffold ID: Ga0160423_10026465
• Source Dataset Name: Marine microbial communities from the Costa Rica Dome - CRUD Field 142mm St8 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4319
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (63.64%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: unclassified Hyphomonas → Hyphomonas sp. (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Photic Zone → Surface Seawater → Marine Microbial Communities From The Costa Rica Dome And Surrounding Waters

Source Dataset Sampling Location

• Location Name: Costa Rica: the Eastern Pacific
• Coordinates
  • Lat. (^o): 8.7051
  • Long. (^o): -86.4906
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003361	Metagenome / Metatranscriptome	492	Y
F006940	Metagenome / Metatranscriptome	361	Y
F069469	Metagenome / Metatranscriptome	124	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0160423_100264653	F006940	GAGG	MKRLSLDDISNAPSLPEKEIEIPEWDATVLVTGLTKADAVEINELSEKEGVRDEVLFEKHLLLKGLKDPQFDDLDQVEEFYSKATPSIVDKILIGIYRCMAWTKEDQASIASEFPE*
Ga0160423_100264656	F069469	GAGG	MKVKILIGSDFSINKKEVRAEAGEVLEVPDKVAKALIKNNAAVKFDSKMMKEEEE*
Ga0160423_100264658	F003361	N/A	MKLTLNGALDLSRSINSQTIWNKRSNDFFNNLARELKDDSLNALENKPSPRSQAGRGNKNTGKTRRSVFTAKLGNTNRLRMSEGFKLATDLNYAPFIHGKPIYRGFSPIKRTRPFFPPYHEGSSLAKWAKRGQPKMNPFLVARAISKRGLKMKPFIGGVVFEKQKEIKEGAEDMLRLIAKDIARSVR*