Scaffold Ga0160423_10024281

Overview

Basic Information

• Taxon OID: 3300012920
• Scaffold ID: Ga0160423_10024281
• Source Dataset Name: Marine microbial communities from the Costa Rica Dome - CRUD Field 142mm St8 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4527
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (77.78%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Maribacter → unclassified Maribacter → Maribacter sp. (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Photic Zone → Surface Seawater → Marine Microbial Communities From The Costa Rica Dome And Surrounding Waters

Source Dataset Sampling Location

• Location Name: Costa Rica: the Eastern Pacific
• Coordinates
  • Lat. (^o): 8.7051
  • Long. (^o): -86.4906
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005315	Metagenome	405	Y
F007006	Metagenome / Metatranscriptome	360	Y
F072868	Metagenome	121	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0160423_100242815	F005315	N/A	MLIISCGDSYTEGEGLTDKQQAYPYLLSNKLKSDLINLAQSGASEYLITAQVEEAVKKKPNLILIGHTSEWRWQVWDVRKNHWQGFLVANHVIRNEKYYRNWVFSEQILDNNRKNDKRHRAAWHAAGMLYFSEQDLVHRLWSGAVAKQILLCQRAGIPVIHHCCFPHLQPLLSELTEDYVEYHLDLQKHKDPAPDYSHAGVKSHVELAELIRSKHQQTL*
Ga0160423_100242816	F007006	GAGG	MEPALKAEMKQEISRIVDLMIQAEAIREQMASLKKDIKEEYGIPVATITKVATIVRKQNLSEEEDKWEEIKEFVDACS*
Ga0160423_100242818	F072868	AGG	MYFKLTSKNGYRDLVRNARRISISQLSDSEKREAYQELYEVLKPRLGEMTHMLNAEAAYAQRITHWNERDVAVLKPVKTLRNPWLRFKREFVDAIDARNASRAVEVALAWFYQHPHRDDWVVT*