Scaffold Ga0160423_10019829

Overview

Basic Information

• Taxon OID: 3300012920
• Scaffold ID: Ga0160423_10019829
• Source Dataset Name: Marine microbial communities from the Costa Rica Dome - CRUD Field 142mm St8 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5065
• Total Scaffold Genes: 20
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 16 (80.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Photic Zone → Surface Seawater → Marine Microbial Communities From The Costa Rica Dome And Surrounding Waters

Source Dataset Sampling Location

• Location Name: Costa Rica: the Eastern Pacific
• Coordinates
  • Lat. (^o): 8.7051
  • Long. (^o): -86.4906
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F021206	Metagenome	220	Y
F049285	Metagenome	147	N
F065691	Metagenome	127	Y
F089518	Metagenome	109	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0160423_1001982912	F089518	AGG	MEYVIELKGKGGKCFAYHSTKEKSELDRLVKKYLAMKDITVEVKQEEIT*
Ga0160423_1001982913	F065691	N/A	MVYGGEGSNIKRLSQMAKRKRIEDIPLNIYIPEPITILLAVLSFLAGFLYRKYNDKEDIADAFDEGFEKGTKDVVKALSELTGRDIHIELERENMDR*
Ga0160423_100198294	F021206	AGGAG	MTVTLNQILAMENVLATRKIPSDIAAMAKAKRYSESKQKVITLGEQPLHYVLRILAKEGLEKNEI*
Ga0160423_100198297	F049285	AGGAG	MKLVKVRVNKTIEYEVSFPVQEDHSYEQVRDYLQTIDWEREIEVSPQNYKHIAEYYDLLHWTNWLDWETENV*