Scaffold Ga0160423_10018754

Overview

Basic Information

• Taxon OID: 3300012920
• Scaffold ID: Ga0160423_10018754
• Source Dataset Name: Marine microbial communities from the Costa Rica Dome - CRUD Field 142mm St8 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5221
• Total Scaffold Genes: 16
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 15 (93.75%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Photic Zone → Surface Seawater → Marine Microbial Communities From The Costa Rica Dome And Surrounding Waters

Source Dataset Sampling Location

• Location Name: Costa Rica: the Eastern Pacific
• Coordinates
  • Lat. (^o): 8.7051
  • Long. (^o): -86.4906
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F022888	Metagenome / Metatranscriptome	212	N
F069323	Metagenome / Metatranscriptome	124	Y
F092743	Metagenome	107	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0160423_1001875411	F069323	GAGG	MNDQPKEKRITVKIPERHLTWIIKNYLKAKQGTTSLFEYGGIDIQEVHAIADLLYHLNEAFKIEESE*
Ga0160423_1001875413	F022888	AGGAGG	MNYIYERMMAEGETAIFDKDDLRKFESYVADHYTEFYEGKASYEVKKDGDKFLVTLFENPVISMEEILLDIQD*
Ga0160423_100187547	F092743	AGGAG	VEEYLVDVLFDGKKEQLKTFSASPLEALDSMINFEDVEAVYKITRQTDKKNWSFNNDKLLELRKLRDLVNNEGAILQELRRSH*