Scaffold Ga0160423_10011358

Overview

Basic Information

• Taxon OID: 3300012920
• Scaffold ID: Ga0160423_10011358
• Source Dataset Name: Marine microbial communities from the Costa Rica Dome - CRUD Field 142mm St8 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6920
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (58.33%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Photic Zone → Surface Seawater → Marine Microbial Communities From The Costa Rica Dome And Surrounding Waters

Source Dataset Sampling Location

• Location Name: Costa Rica: the Eastern Pacific
• Coordinates
  • Lat. (^o): 8.7051
  • Long. (^o): -86.4906
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001222	Metagenome / Metatranscriptome	743	Y
F003188	Metagenome / Metatranscriptome	502	Y
F020020	Metagenome / Metatranscriptome	226	Y
F029450	Metagenome / Metatranscriptome	188	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0160423_100113582	F020020	N/A	MKKYIVEFTHADGTVEEVELTTDRIQWSIDQWSRNRAVTDYKIISEGSSRSKKMLFG*
Ga0160423_100113583	F001222	GGA	MKKLENLVNQVISEATKINFAGHSFLLKTDTNEDPQKKGVKVQFVPTEFGALSPTEQNDIAIELEERLEKGLAEYDLRVERDRNLKDKTIIGFFIYIEYFDKLIRKALSTNNPNADLDDSEELGS*
Ga0160423_100113584	F003188	AGAAG	LDPRKKLREVLFSIHPLSYRIRQIGLDKETMNKKLFVEILKQLRKIEDRRDFMAEEIGMDMTTYEDQFFRVIEDLMKMCFNKEQLALIQMYLYQLVPDKEWDGTITVSNNKSKKDEVVPFKTPNDVWNVINKFD*
Ga0160423_100113589	F029450	N/A	VVKLHFRDTSDFEVLFKRKTLSVTRSIIKGIEEAMQKNNSKTAPLFEISFENADNMYEISLPRSQWVQALESCLEHLHAKDLSDEQIDCWKLIEVAKAW*