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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300012920 Open in IMG/M |
| Scaffold ID | Ga0160423_10011256 Open in IMG/M |
| Source Dataset Name | Marine microbial communities from the Costa Rica Dome - CRUD Field 142mm St8 metaG |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 6961 |
| Total Scaffold Genes | 11 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 6 (54.55%) |
| Novel Protein Genes | 3 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (66.67%) |
| Associated Families | 3 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Oceanospirillales → Pleioneaceae → Aliikangiella → Aliikangiella marina | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Oceanic → Photic Zone → Surface Seawater → Marine Microbial Communities From The Costa Rica Dome And Surrounding Waters |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Costa Rica: the Eastern Pacific | |||||||
| Coordinates | Lat. (o) | 8.7051 | Long. (o) | -86.4906 | Alt. (m) | Depth (m) | 5 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F033639 | Metagenome / Metatranscriptome | 177 | N |
| F051947 | Metagenome / Metatranscriptome | 143 | Y |
| F089555 | Metagenome / Metatranscriptome | 109 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0160423_100112564 | F033639 | AGGAG | MSYSTTGTINEVLIGTGVLYIKDRSTSSLAFPGDDGANAWDDPTAMAVTWDEVGYSEDGWSLEVDKTFEDVMVAEELDPIKSLKSAQEVRLTGELAQASLDNLSVAMGGGSTAEDTANYAAGGGYFKYVPPTTDEFTEYALVLHTDGKAGSDRQFHIPRAVNVGSFSMAHQKAPQKVTLATEFKLLVPDSTLNVGQSGAGNYYLFIVVENRNDSDELDIN* |
| Ga0160423_100112566 | F051947 | AGGA | MPIKRVGAIPHQTMNFPPDAEIIFREWAVNITPITNVCSTRIATRLPRNADLPFLTYFVAGGDMLSPTSDAAISNATINLNAFAGRWGGGNSSQPDYANAYALANAVAEGAFKTGKTIVHTASSDTKAVIYGFDVVQLPERVEETDTGLGLYRLSLNMYYRGT* |
| Ga0160423_100112568 | F089555 | N/A | MPLRERFLPETCTIQSVDESVLDERGLPSNDWANATTGVRAKFESQGMTEDRDGRNTTVETFNVYLQKGVSVVPGDRLVRGNEYHEIIIVTPYLDRYGVECYKQVQTLVRT* |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |