Scaffold Ga0160423_10010686

Overview

Basic Information

• Taxon OID: 3300012920
• Scaffold ID: Ga0160423_10010686
• Source Dataset Name: Marine microbial communities from the Costa Rica Dome - CRUD Field 142mm St8 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7167
• Total Scaffold Genes: 26
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 20 (76.92%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → unclassified Candidatus Pelagibacter → Candidatus Pelagibacter sp. TMED202 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Photic Zone → Surface Seawater → Marine Microbial Communities From The Costa Rica Dome And Surrounding Waters

Source Dataset Sampling Location

• Location Name: Costa Rica: the Eastern Pacific
• Coordinates
  • Lat. (^o): 8.7051
  • Long. (^o): -86.4906
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F017831	Metagenome / Metatranscriptome	238	Y
F071269	Metagenome / Metatranscriptome	122	Y
F078785	Metagenome / Metatranscriptome	116	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0160423_1001068622	F071269	AGGAG	MKNQYKVDFYQTVYLGSQIVEAEDEHQAKTDAMNMNYKAGIGLKWADDWEATIDQHHDYMFICTAHSKQECDDDECWEEFENKQEQFA*
Ga0160423_100106867	F078785	N/A	MNDLVDEPIHEQFEYGNYLIVLHWLPQWKQFEARLYIKSDSGHIELGKFVDDSLYGARKMAINSLGGYSGIIPKDETQVS*
Ga0160423_100106869	F017831	N/A	MSDGDIILKYMSCKENVPHVMFQYADLYVEHFDEENIDTAVRIGWCESRGKSNAFRKDNRDSGVMQFVSWTWNWVAEKYDIPMWNDWVIMYNDRPYTSDKVSKSSIGFSQEQVQFTPYYNIYMASLLAEDIYGRTQWRDWSSSEWCWGDEDKWKLKWKSEN*