Scaffold Ga0160423_10009965

Overview

Basic Information

• Taxon OID: 3300012920
• Scaffold ID: Ga0160423_10009965
• Source Dataset Name: Marine microbial communities from the Costa Rica Dome - CRUD Field 142mm St8 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7445
• Total Scaffold Genes: 16
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (43.75%)
• Novel Protein Genes: 10
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (40.00%)
• Associated Families: 10

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Photic Zone → Surface Seawater → Marine Microbial Communities From The Costa Rica Dome And Surrounding Waters

Source Dataset Sampling Location

• Location Name: Costa Rica: the Eastern Pacific
• Coordinates
  • Lat. (^o): 8.7051
  • Long. (^o): -86.4906
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004990	Metagenome	416	Y
F006892	Metagenome	362	Y
F008915	Metagenome / Metatranscriptome	326	Y
F015659	Metagenome	253	Y
F016879	Metagenome	244	Y
F017558	Metagenome / Metatranscriptome	240	Y
F026438	Metagenome	198	N
F046315	Metagenome	151	Y
F059875	Metagenome	133	Y
F079202	Metagenome	116	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0160423_1000996510	F026438	N/A	MANHINVIGDSYKKFGLKHTSKSTACLPHSIRFFKKHILTEKENSEISNASLSGGTLIHLIVQDCLTKGMKVADVIKSEKIQNKINEYKPLDEKDEQKFKFIVKSAQETALNHLNNIAELGGQEWQDEQEQVLWTPPVKTYWLMYIDLVSKTLLGDLKNKFGNPTLTKTKGWTYSNVKCPDRPFYSDVQQVALYNKATGLKPFLSYASNCDRKLFTQDNCEDLKPENLKKALKELMIYEIAWEKKLELADGDLNTLSWLCCPDFSDIKKKSFWWTGVAQEQIDRLLKHYE*
Ga0160423_1000996511	F046315	AGG	MKRNNLLIKDFTFNKSMLDIILKKYNKKISDFIKDTYSEKEQKNKFAQISKILNPKKNAPHYFTPNHLAYDLAQWVNNFSTTDVTISPQFFMGENVQINCVGSLYGNGQVGIHKGKDIHKINIHPKYSACLAVEVHTDGSNNLMMIYKPSKIIDRNVNGKFGLAQDKKTKIIWYGFIEPLSNGKYNILDKSQCTGKTIGKLAENIQLSWSTEIKASYYPTIYNI*
Ga0160423_1000996512	F059875	N/A	MSVLVLIFGVITNDGQIDLVKVPNSELKNINSCEKAIEKNLKWVDNPNFEQNSLPHGFYTYKNRVVMLQYCHLEGVESE*
Ga0160423_1000996513	F008915	AGGGGG	VNNEVTLDLYEMQSASHLGILRCLESKKHKENWGYNYKGSLNDQMAKSISGAMGEVAASKFLNIKFEYHANVGGVPDLIFKDLRLQVRTQLPKDNNKNSLIIRPKAKPGELYILVIDEAPKFKILGFVNSTFVLGQEQWKTTFGLDRPFCYSIPPDKLTPIELLKNGTWN*
Ga0160423_1000996514	F004990	N/A	MELDEYFDPKKPCCICKRGADLREGSKYYCCDHYALYVLGKPMSQIEKELNDPITK*
Ga0160423_1000996516	F079202	N/A	MKYFEKIDKDLINNRALNSHEKLIYIICKSFENAPR
Ga0160423_100099652	F017558	N/A	MFFIIFKNKNNILTSYSNQIFSTEAEATDYAKRSLKKKDVWQVVRYNTENYNKYWYKT*
Ga0160423_100099654	F016879	N/A	MSVFKESFFEASFKTIEEFDNAEVASAKLNVSEDANLEIIDIKLNKSLIKTNNDKEHENATEQHSKTVPEIK*
Ga0160423_100099658	F015659	AGGAG	MKERTLRDAIQKFRQNIEDSDYANLGAKGKYLTVPYRIKFVRDYFGERMSIQTESTELTNGSHKFKANIYIDEKLVSVGESKQMKNADKEFEKQQTVSIGRGLSILGFFGDELATAEEMEQFLKPQKKVVKDKTFENGHKVNYPKDEPIEDKKSIKQLADEWIEVLKKTATHSASVGKFEQNLNPLRQSYLSDLKQINSDLIQQQRIDQEYISLQKQITNRKK*
Ga0160423_100099659	F006892	AGG	MSDTGIIVPLKERIRDLETINKAHQKKNGQLRQEIQDKDKLIKELQEKLKNPLNKMREQGEI*