Scaffold Ga0160423_10008526

Overview

Basic Information

• Taxon OID: 3300012920
• Scaffold ID: Ga0160423_10008526
• Source Dataset Name: Marine microbial communities from the Costa Rica Dome - CRUD Field 142mm St8 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8132
• Total Scaffold Genes: 19
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 18 (94.74%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Photic Zone → Surface Seawater → Marine Microbial Communities From The Costa Rica Dome And Surrounding Waters

Source Dataset Sampling Location

• Location Name: Costa Rica: the Eastern Pacific
• Coordinates
  • Lat. (^o): 8.7051
  • Long. (^o): -86.4906
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002858	Metagenome / Metatranscriptome	525	Y
F024320	Metagenome / Metatranscriptome	206	Y
F030067	Metagenome / Metatranscriptome	186	N
F073499	Metagenome / Metatranscriptome	120	Y
F103165	Metagenome	101	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0160423_1000852611	F002858	AGGAG	MLIDEKSIYEVTGGDYSVYCLGYTQARTVTNDIMRRDPWGGIPFVIRKDLELSLDDRGNVVMTKSTLDKILFIASDELPEGES*
Ga0160423_1000852613	F073499	AGGAGG	MTEQELEQWLRDNPWKANVIYPAGGIGFMMFIMYTCVQIIDSFLTGSLV*
Ga0160423_100085265	F103165	AGGA	MITFYMCQITGKYFEDTLIAKTTERVMDYPDEPSWGLYKTFDGLAVLVDSDVREAREAVDNDS*
Ga0160423_100085268	F030067	AGGAG	MMMSRESWEIAHDEYYDDLEADDYVGLDDISAWKEEEQKIIDELCKRMEKAYDDNR*
Ga0160423_100085269	F024320	GGAG	MTIDEYAVECGGLEDNLGPTVDPLEHAMVEHLVEFDTEMYRLESRRKYIGLPYGHLERLMIELHGEYWRDAL*