Scaffold Ga0160423_10007186

Overview

Basic Information

• Taxon OID: 3300012920
• Scaffold ID: Ga0160423_10007186
• Source Dataset Name: Marine microbial communities from the Costa Rica Dome - CRUD Field 142mm St8 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8952
• Total Scaffold Genes: 18
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (66.67%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Photic Zone → Surface Seawater → Marine Microbial Communities From The Costa Rica Dome And Surrounding Waters

Source Dataset Sampling Location

• Location Name: Costa Rica: the Eastern Pacific
• Coordinates
  • Lat. (^o): 8.7051
  • Long. (^o): -86.4906
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012123	Metagenome	283	Y
F041145	Metagenome	160	N
F046317	Metagenome	151	Y
F081207	Metagenome	114	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0160423_1000718611	F012123	AGG	MIKRNPCRVKKVEYREDGVHIVERRGYAQERKTIDGEEQVFVMEGGDTGVGYWYPKDEVTLTKGKWTNAKRQ*
Ga0160423_1000718615	F046317	AGG	MNKKMKKEYFEFLINEYDKGNAKIRGEHPEDIKVAVDTFFKAGKVLVDNPEIDNIPQEYVHKLLEALAQHPQYHALLIDLVGIIQDGEGDG*
Ga0160423_100071866	F081207	N/A	MKKLVKLIDNKKTYNKEIKSLRKLLDDGEYTRVLPSGYHHFLSEMHRKLVGNVRITPKMLSAVEQAIESYGNYNSPEDKIKRDTMLAKITKLKYLLAQCGYTRQYEAEKMEFLDSITGRVHSRGKLTPKQAKYANQLFKQFSKRVLP*
Ga0160423_100071868	F041145	GGA	MSKSANISHDNLLKKLTMLVKLCEETEPTPKQLLKMSGEKNANMTDLFTPEMIDAKFYLEEVKAEEYDNYSVIDIMRACNTIWRWRMKVKKDGWPDMSSIEYICGEYIKKNQKIAAIKKYRQYMKDRDKEVSLREAKDWVDRLAIKMDLD*