Scaffold Ga0160423_10005184

Overview

Basic Information

• Taxon OID: 3300012920
• Scaffold ID: Ga0160423_10005184
• Source Dataset Name: Marine microbial communities from the Costa Rica Dome - CRUD Field 142mm St8 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 10633
• Total Scaffold Genes: 25
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 20 (80.00%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Associated Families: 6

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Photic Zone → Surface Seawater → Marine Microbial Communities From The Costa Rica Dome And Surrounding Waters

Source Dataset Sampling Location

• Location Name: Costa Rica: the Eastern Pacific
• Coordinates
  • Lat. (^o): 8.7051
  • Long. (^o): -86.4906
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006383	Metagenome	374	Y
F006867	Metagenome / Metatranscriptome	363	Y
F015346	Metagenome / Metatranscriptome	255	Y
F022555	Metagenome	214	Y
F059941	Metagenome	133	Y
F098215	Metagenome	104	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0160423_1000518410	F015346	GAGG	MNPEWTHYRVGDLVSVVMNDVLGVVTKSNYWMADEYLGGNVECVDVMFGVHEFEQYPVEYLVKMK*
Ga0160423_1000518413	F006383	GGAGG	MLIKDKMWQVQQPGTILRARHSARRGQLALVLTKAYHEIRGTGTRGNSYVRMQILSTGERIEELLVNANNCWEIVSTSAD*
Ga0160423_1000518415	F022555	GGAG	LAITPKFKPGQLVKFDHPANPLVGLVKSTRLARRRGDPVVVLVQWCNDQNTEEYIFQKDLKLVEDA*
Ga0160423_100051845	F098215	N/A	MNRYKGAEFRYGIGDLVSFTHTRQTEEYVHDITLTGIIVKQRLVFTADNKFLVRTPERDYWVSRPLLTLLSRAEKI*
Ga0160423_100051847	F006867	GGA	MLQDKEQRKLHKSIQSRCRIQPGMLVKSSHEDVIDKLALVVKVSPACSFDRDYEGAEEHIFYVCEPFDGTPSFVDYVCNLEQVS*
Ga0160423_100051848	F059941	AGCAGG	VKLGTLVNFKAYNAVLDTGYVSRYDEDPEFMWVECVKMGAQRVRKDHTLLEMISEAG*