Scaffold Ga0160423_10005136

Overview

Basic Information

• Taxon OID: 3300012920
• Scaffold ID: Ga0160423_10005136
• Source Dataset Name: Marine microbial communities from the Costa Rica Dome - CRUD Field 142mm St8 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 10689
• Total Scaffold Genes: 15
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 13 (86.67%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Balneolaeota → Balneolia → Balneolales → Balneolaceae → Balneola → unclassified Balneola → Balneola sp. (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Photic Zone → Surface Seawater → Marine Microbial Communities From The Costa Rica Dome And Surrounding Waters

Source Dataset Sampling Location

• Location Name: Costa Rica: the Eastern Pacific
• Coordinates
  • Lat. (^o): 8.7051
  • Long. (^o): -86.4906
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F017488	Metagenome / Metatranscriptome	240	Y
F025294	Metagenome / Metatranscriptome	202	Y
F030452	Metagenome / Metatranscriptome	185	Y
F041743	Metagenome	159	Y
F052627	Metagenome / Metatranscriptome	142	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0160423_1000513610	F030452	AGGAG	MAVINVTSGSQAVLVLGNTSPLATPGAANSLVVPFMQDITVNATPGTVRYSTLDSTASSAFTTVNENSISLNVLLDEDVFFGSSNTANKVANDGLLTTSINKEEVFFSVAFEGTDSSDYYVSGKGFIGGLAPTASIDGAVWLTPIEITVNGELTKATV*
Ga0160423_1000513611	F052627	AGG	MAIRDDLITQITTNTAFTSNVSVSQELPFESGGSPLYNKNMGTVYVDEQQISVEQLYRTLDQSNVNTTTTTVNAYLSTDAKNEFNDIDTVVANLLIARNAVANTIDSTSDYEIEITDDVITYTFEYNFITV*
Ga0160423_1000513612	F017488	GAGG	MAFITNASGNVISFAEYTDLLQKDQRFLESNQVKIPEESGFVDKTDFLEDMCQKATDRILLKLKASTWWQSYNAYIGTPISDLNVLPSVDPDKIDPGNTLGRRQQFTDLCVYYTFKEYLFPLVAEFGNEESPEVAKIQYYNQKFNDLFNELISIADWYDADGDGTVEDSEKAVSYFRKRRTRSRSSIVQVR*
Ga0160423_1000513614	F025294	AGGAG	MMEASTDTAVQSENIEPVTDSANQVEAEQSAPVDTKSDNSTTPKVEQKDGKLFVDGVRVYTRDDTNKIAANAKHEVENRLVQELNVDSIDQVKAVVSTLQEVNPEEGNSLNVDSLRNAVKKREATVEELQNQVKSLKTDLLLKDHMSKLQSAMPSNWSGEQREAVVDLMKARNMLAVEGDTFAIRSGEDFLTTDGETPDYNSAVEVVGKSIGLPFGKKGVDVQYGETAGEGTTQSRALDEKRLISDPEYRSAYTKLRSINPSSSRSSFSDAQVKKMMDKMGINK*
Ga0160423_100051364	F041743	AGGAG	MSLQTIIDNATYVEVDKREQFASTMSRSGHYKTADRNVNVYSFTIGMHEGLTYSTNRGVLEDIYTTGSTNEANISLNNNSGMNYLTAYQGDIAGAQINNITLNGVFGSEIYVDCSSATGSGNLFKKGDYIQPKGNTDTYRYPYQVTSDVSFSTGANVTIPVHRPVLSQTGVALTSGGIKVGNDVRWQVKITNLPKYSVVPHDRIQFSDDFELVEVIT*