Scaffold Ga0160423_10003515

Overview

Basic Information

• Taxon OID: 3300012920
• Scaffold ID: Ga0160423_10003515
• Source Dataset Name: Marine microbial communities from the Costa Rica Dome - CRUD Field 142mm St8 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 13020
• Total Scaffold Genes: 30
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 16 (53.33%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Photic Zone → Surface Seawater → Marine Microbial Communities From The Costa Rica Dome And Surrounding Waters

Source Dataset Sampling Location

• Location Name: Costa Rica: the Eastern Pacific
• Coordinates
  • Lat. (^o): 8.7051
  • Long. (^o): -86.4906
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006958	Metagenome	361	N
F034354	Metagenome / Metatranscriptome	175	Y
F045364	Metagenome	153	Y
F060431	Metagenome	133	N
F093729	Metagenome	106	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0160423_100035152	F034354	AGGAG	MNFKFDDKDYDSDKLSDNGKLYLGKLQNISVKEQQLTLEAQDLAILKGKYTELLKAELPKDEEVEDKKD*
Ga0160423_1000351525	F045364	N/A	MKKKINPATGKEEYRCNLQEAADYLYMTIGQLKHRYSDKSAFHESSIPKKTYLHGIGGFWLSDLEHYKNNNIGETRRNKKKVDEKAETAEVIPFAEKKK*
Ga0160423_1000351527	F093729	GAG	MARNEQYLKVLKTPYSKWHRSLHNGIAMTDIDKIAQCPACGKCLFIGDLIFNKYDQYKTKAFFTKKAYLEISIALQIPYFEIYYTTVGKADNAPLERLSVRRIAPSQGDLYHISLDKWLQYLEFKVQEHIPVCQSKSYLLERILEDNEHNKNFTRRNDYVKLLSNRS*
Ga0160423_1000351528	F060431	AGGAG	MSNFYLTDPNILTAPLTDQEFKIYHYLCKNYNVQKHTAFVKLVNIAGLYQLTVHEVETILVKFCTIKVNGLPLMSIKEDKYKIFGMPSHKKFLEEIGFKQNSSYKGYRAINGYLKQLGEQEQETLKRYIYPTLDQYELQDKLEELPTEELKKIKKSQLKYPWKLDEVIKNRP*
Ga0160423_1000351529	F006958	GGA	MKLSKIDHDLNQYLYVRSNIINILADAAIAERFIRAPSNKRCPSMYQMLETYYDKKDWGYHLEPKLKLRGTPKQMQNYDTAIDLLLMIDKDISDEPVLMRKISWMRANRNKWTVIGKYFGINRTSVKRMYDKVLDKLSNKIISESVDILIKKFS*