Scaffold Ga0160423_10002971

Overview

Basic Information

• Taxon OID: 3300012920
• Scaffold ID: Ga0160423_10002971
• Source Dataset Name: Marine microbial communities from the Costa Rica Dome - CRUD Field 142mm St8 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 14102
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (42.86%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Photic Zone → Surface Seawater → Marine Microbial Communities From The Costa Rica Dome And Surrounding Waters

Source Dataset Sampling Location

• Location Name: Costa Rica: the Eastern Pacific
• Coordinates
  • Lat. (^o): 8.7051
  • Long. (^o): -86.4906
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F021099	Metagenome	220	N
F027355	Metagenome / Metatranscriptome	195	Y
F047384	Metagenome	150	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0160423_1000297113	F021099	N/A	MAFSNLTLTRNNIDALEELTFKGVNVTTGSTTLNLSEKDNLILGKAIKLLKTDILENLREYINDTTYSTETDLLDAIHAADSEELLVDLLSYKFLELWFAQDATHRDSYSYEKARKYYAMYNQYLTANLRRLSGLLAKPKTTPRVRFMSLY*
Ga0160423_100029713	F047384	N/A	MPKLANIKVVTDAGGTQTLTIQNYAESDELEFWGSSFDEALDGSLRSNFRDFRRKIGLTYNLCTTPDTYRSICNNIATDLINGSTFVYIGIDTNNLIRVVLDDGFASRVQYANQHGLFIPKINFTAFNLGLEITLNFEDYRFVNEAVTVQENYGLITATATQTLDYGSV*
Ga0160423_100029717	F027355	GAG	MGRITKVTGEFMGVRFEVKPTPIRFDKIVEERRQMLLDWYKQNHPKTHKKITDDKIAVEDYEMADFDAINAWRLDEEFRAKYCKYTADHCLKLDSLIDDKTWKSDELELGTLEEAWDFFTNRRQVPINGVGVL*