Scaffold Ga0160423_10001811

Overview

Basic Information

• Taxon OID: 3300012920
• Scaffold ID: Ga0160423_10001811
• Source Dataset Name: Marine microbial communities from the Costa Rica Dome - CRUD Field 142mm St8 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 17891
• Total Scaffold Genes: 39
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 36 (92.31%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Photic Zone → Surface Seawater → Marine Microbial Communities From The Costa Rica Dome And Surrounding Waters

Source Dataset Sampling Location

• Location Name: Costa Rica: the Eastern Pacific
• Coordinates
  • Lat. (^o): 8.7051
  • Long. (^o): -86.4906
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F052944	Metagenome	142	Y
F054436	Metagenome	140	N
F057393	Metagenome / Metatranscriptome	136	Y
F092883	Metagenome	107	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0160423_1000181110	F054436	GAGG	MYYVAHYKNNTGDMVIWRHVKRLKDFKAIDGVEYIVAKNKKEMNIQMGSSLPIYIGLDGGLKKCSSYALYLF*
Ga0160423_1000181125	F052944	GGAGG	LKIIQGNFNKDKTKSLDDKVLEGLTQLKNQSNDEEIRYPFILIVDTGEDLKVVSDIDMEKFNLLLDLVKMTVLTGSYD*
Ga0160423_1000181128	F092883	GGAG	MWRYTNDDKVYDVEKASPEAQATFMLLAEVQGRAEKMETEMTIIQASAVALHQKMQELITDDALVEDDEAEE*
Ga0160423_1000181139	F057393	AGGAG	MKEGTLVGFRIIIDSDGVLMTEQTELPDEHISKVFREEESQILVRAAIRSFKEITGDMHSKLET