Scaffold Ga0160423_10001693

Overview

Basic Information

• Taxon OID: 3300012920
• Scaffold ID: Ga0160423_10001693
• Source Dataset Name: Marine microbial communities from the Costa Rica Dome - CRUD Field 142mm St8 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 18468
• Total Scaffold Genes: 40
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 30 (75.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Photic Zone → Surface Seawater → Marine Microbial Communities From The Costa Rica Dome And Surrounding Waters

Source Dataset Sampling Location

• Location Name: Costa Rica: the Eastern Pacific
• Coordinates
  • Lat. (^o): 8.7051
  • Long. (^o): -86.4906
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005620	Metagenome	395	Y
F018814	Metagenome	233	Y
F028524	Metagenome / Metatranscriptome	191	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0160423_1000169314	F005620	N/A	MKGVSVLEKDITKHIETFKIFCKNNRLRLKEDGDGLPVARAIGKFNEDQFFCNFREGTIGVFVTRESQRQFTYLHKKLLKLGCVATQLGDFEASYDLEWMNIPPVARLLKIRKGAAKVKNPTWLKNK*
Ga0160423_1000169317	F028524	AGG	MTTINNEFEATVKEFVDKLTTIENEMTILRQDRSELFGEMKEKLDPRSFRAALKIHNLQKSTPDQTSLARILEVLETAQ*
Ga0160423_1000169331	F018814	GAGG	MDATKSYIKIYNISHEEAEDFEFDYSVDDSDLLTELVPHQEDWGQLSWGIELEEYEYNPQDNTMHLTLDTKWEVPVEWLRNASIGNRYFENRLITMSTIQKDETCVTGVAIMDGEVLQNKTVWSMDSEEVGKYYDDEFPNYDLDDLDNLIWDSIGKFLGVCEKFYLEKEENNND*