Scaffold Ga0160423_10001519

Overview

Basic Information

• Taxon OID: 3300012920
• Scaffold ID: Ga0160423_10001519
• Source Dataset Name: Marine microbial communities from the Costa Rica Dome - CRUD Field 142mm St8 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 19434
• Total Scaffold Genes: 42
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (23.81%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Photic Zone → Surface Seawater → Marine Microbial Communities From The Costa Rica Dome And Surrounding Waters

Source Dataset Sampling Location

• Location Name: Costa Rica: the Eastern Pacific
• Coordinates
  • Lat. (^o): 8.7051
  • Long. (^o): -86.4906
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F014805	Metagenome / Metatranscriptome	260	Y
F021015	Metagenome / Metatranscriptome	221	N
F058213	Metagenome	135	Y
F061923	Metagenome	131	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0160423_1000151917	F014805	AGGAG	MGLYKSITTDAGSTLNYWDFGIVEVNTAASKKEDQNAVVNIWGYHDVDYYNAGKPPIERWNQYACNMVSGTDHYPYMDLTGVSGEVTGTKRLGPDLPNDWSWTANSVSGWMANSSDIRNGAQAWALNCVPAFSGAVVTGQVYPD*
Ga0160423_1000151918	F021015	N/A	MGLNLNYTKEDGQQAFYWKVSRVENWFQGTTGPDYGSNINTLGFTNETYRDQGAPSVADNMYNCPYSGAKDYYDYVDLTGVSGEVTGQKRLGPPLPADWDWAENGVSGWMQRSDDIRSGAYVWLKNCVPFFSGATDALTEGE*
Ga0160423_1000151921	F061923	N/A	MRPETKENINKQVIEVARARGTMQSLAESWGTDVKYLKVRIAEVEEKLTKVQNALEEIEWSEETDWLGKLNE*
Ga0160423_1000151934	F058213	N/A	MICYECGTKAQRKEIRSAKKETRDPQITIRCGTWRKGSCDKCKKKRIHVTEISDFILIK*