Scaffold Ga0160423_10001482

Overview

Basic Information

• Taxon OID: 3300012920
• Scaffold ID: Ga0160423_10001482
• Source Dataset Name: Marine microbial communities from the Costa Rica Dome - CRUD Field 142mm St8 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 19594
• Total Scaffold Genes: 43
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 33 (76.74%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Photic Zone → Surface Seawater → Marine Microbial Communities From The Costa Rica Dome And Surrounding Waters

Source Dataset Sampling Location

• Location Name: Costa Rica: the Eastern Pacific
• Coordinates
  • Lat. (^o): 8.7051
  • Long. (^o): -86.4906
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012535	Metagenome	280	Y
F033640	Metagenome / Metatranscriptome	177	Y
F053555	Metagenome	141	N
F095406	Metagenome	105	N
F105064	Metagenome / Metatranscriptome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0160423_1000148213	F012535	AGGA	MMTFYTAGKVWHAPKFQNLRDNLGFAVKARWIDLDDDSDIVQNHKDQLWTLCFEDVRDSDFVLLYCEDFNEEQRGALVELGMAYGFDKPVYAVGTCKTIQPNEISDVAFTHYPKFHWLPTSDLVEGAKMALQIEKRKAQIMKEIAA*
Ga0160423_1000148223	F105064	AGGA	MPGIRFSFIRDEAQEQWVTEVGKLQPATDTTYVWNSEHVTADREGLHELFDRFIDSTGLVEEKE*
Ga0160423_1000148227	F053555	N/A	MALQQTQFIGNSVDDWQLQANTWIDIAYSCVNTPLLPKYQYHVLDRCLRGASDIISCETTSVHSNTASLIQWCKLWSEHALDTYWQIRDWQTEERDGKPPTHRQISNARMNTGKRWFTCEHEYPIIIPKKGVRDHGWTLQQLRDWMWEYSRVTIILNSENDELLPFTEDMNLAAKRYENAGIVVCEHPQHQQES*
Ga0160423_1000148229	F033640	GGAGG	MLISFYYQTVDGESWQENFDSLEEAKSHFLYQMGRTYDIGSSYAVNTYGDCTCTVDGATWEELGLG*
Ga0160423_100014823	F095406	AGGAG	MSKQPRDDGNEPIPVLGLRPNKGHQVPYTTSSNTSPAISSSVRVVTLYATTDCFIETGDASVEAFTSNSHFLPNSVPYDVSLGAENDASDNDKFVAVIQSESAGKLYISERE*