Scaffold Ga0160423

Basic Information
Taxon OID	3300012920 Open in IMG/M
Scaffold ID	Ga0160423_10000742 Open in IMG/M
Source Dataset Name	Marine microbial communities from the Costa Rica Dome - CRUD Field 142mm St8 metaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300012920 Open in IMG/M

Scaffold ID

Ga0160423_10000742 Open in IMG/M

Source Dataset Name

Marine microbial communities from the Costa Rica Dome - CRUD Field 142mm St8 metaG

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	27139
Total Scaffold Genes	51 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	12 (23.53%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (20.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

27139

Total Scaffold Genes

51 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

12 (23.53%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

1 (20.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Photic Zone → Surface Seawater → Marine Microbial Communities From The Costa Rica Dome And Surrounding Waters

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Oceanic → Photic Zone → Surface Seawater → Marine Microbial Communities From The Costa Rica Dome And Surrounding Waters

Source Dataset Sampling Location
Location Name	Costa Rica: the Eastern Pacific
Coordinates	Lat. (^o)	8.7051	Long. (^o)	-86.4906	Alt. (m)	Depth (m)	5
Location on Map

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Source Dataset Sampling Location

Location Name

Costa Rica: the Eastern Pacific

Coordinates

Lat. (^o)

8.7051

Long. (^o)

-86.4906

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F002047	Metagenome / Metatranscriptome	599	Y
F004866	Metagenome	420	Y
F005243	Metagenome / Metatranscriptome	407	Y
F006666	Metagenome / Metatranscriptome	367	Y
F059027	Metagenome / Metatranscriptome	134	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0160423_100007422	F002047	N/A	MKNKVALPLSKQEDKDQLVNLGYLNLDNNVYKLTPQAKLFMVRLDNYFIKAKKKTDIQLMGKNHVDKINAYREIFPAKKLPSGKPARNNVKALGEAFRWFFETYDYTWDDIIKATKMYVNEYRDADYLYMQTSQYFICKQDKHRVKHSTLADYCDMILEGINTEDEHFKENVV*
Ga0160423_1000074235	F005243	N/A	MANKTNNQPLDEKEPQMSKEEMAKRREEITEFYKDNIPHLEVQADYEMLLAAIEKARAERMQAQMFMAQSYANQNGQSSVDPNSEEGKAFQEAMANAVKDQK*
Ga0160423_1000074237	F004866	GAG	MALVNKVDLKLQVDLNKSIKYQIVTYCFFKDILISNSDLKFLSELAKSGKIELTKFCSDLVKENIFKSSQSARNAITKAEKKGLLDKQGINKKTITINNDMNVQTTGLVLLDYKVLGRETQES*
Ga0160423_1000074238	F006666	N/A	VKPKSHKDFKEGIADEVGVHQSVVDDFISFYYAKVRSKLSNLEFPRIYLDGLGTFYLRKNKLEKAIKRNKSILGNLAKRTYAGFAKSEDVQRDIEKMEKALEQMEKDILNKKKFRNER*
Ga0160423_1000074250	F059027	N/A	MGAPKQLAVLKSQFESPAYEGVSRAETGNARLLHVNLVRSWIRDIADSDSYLDNAAAKAAGLKKGDLYHTAGLLKIVI*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0160423_10000742

Overview

Ecosystem & Geography

Associated Families

Sequences