Scaffold Ga0160423_10000096

Overview

Basic Information

• Taxon OID: 3300012920
• Scaffold ID: Ga0160423_10000096
• Source Dataset Name: Marine microbial communities from the Costa Rica Dome - CRUD Field 142mm St8 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 59817
• Total Scaffold Genes: 75
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 55 (73.33%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Photic Zone → Surface Seawater → Marine Microbial Communities From The Costa Rica Dome And Surrounding Waters

Source Dataset Sampling Location

• Location Name: Costa Rica: the Eastern Pacific
• Coordinates
  • Lat. (^o): 8.7051
  • Long. (^o): -86.4906
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011848	Metagenome / Metatranscriptome	286	Y
F019852	Metagenome / Metatranscriptome	227	Y
F087182	Metagenome	110	Y
F103350	Metagenome / Metatranscriptome	101	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0160423_1000009614	F103350	AGGA	MATVKKYNLAGLNANVELGKQGSYITGASGKVGFYANGGALTKLEIADATAATEAVTKSQLDAVAAELIQHITLDFDYDSADSNIASISAGSRIISVTVDIPTAWTAPNNTATYIEVGDSSNNSRFIRAGDVDVLKAGQYHSQYQYEYQTADNLQINIVEGTASAGTGTVSVVLASDSVTVTDYGSITQSQNSNSDLGNIS*
Ga0160423_1000009631	F087182	N/A	MSQYTDKINKIAQDFAEIEYYEGVSALEARDGMMIVHYYHGGKQITFHKDSEYEGTKGKEGDVITLPSWDKDYLRLKEKYDSGETWQQTFARWWKKIKNITYSRSNLFRD*
Ga0160423_1000009638	F011848	AGGA	MSKTPYEIRLDLVKEAKEILQAKAKNPEDMPTTEQVLEEAEKLNQFVSKKPFGER*
Ga0160423_1000009639	F019852	AGAAGG	MPTKFKPSQTTFVKGQGKVTNHFYIKNTPKEELIDYINKGQKKKIKQKCRNELHRRGINLVWKTPEND*