Scaffold Ga0160422_10274146

Overview

Basic Information

• Taxon OID: 3300012919
• Scaffold ID: Ga0160422_10274146
• Source Dataset Name: Marine microbial communities from the Central Pacific Ocean - Fk160115 60m metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1034
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Photic Zone → Seawater → Marine Microbial Communities From The Costa Rica Dome And Surrounding Waters

Source Dataset Sampling Location

• Location Name: The Central Pacific Ocean
• Coordinates
  • Lat. (^o): 10.0
  • Long. (^o): -145.0
  • Depth (m): 60

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003020	Metagenome / Metatranscriptome	513	Y
F011410	Metagenome	291	Y
F015532	Metagenome / Metatranscriptome	254	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0160422_102741461	F003020	GGAGG	MPDISKFKSVSVSTDTHAKLSSLAQNRFEVPVSVQKVIEFLLEKELKKRKNGRSNGRSRG
Ga0160422_102741462	F011410	AGG	MKDFKIKLEWYTSNLLVWVILTISLGLMIVNIVTMYNMYSVIDTMWHEMVQIKETNAYLYQFIEEHRNDFD*
Ga0160422_102741463	F015532	AGGAG	MTLIKDNTKMRKEIPNRMMSATFALPIDERRVVGILDYVASDTGVTPMAFWIKLKPTDSYLDRELRASGKLISRCLQHGESLKDLV