Scaffold Ga0160422_10104180

Overview

Basic Information

• Taxon OID: 3300012919
• Scaffold ID: Ga0160422_10104180
• Source Dataset Name: Marine microbial communities from the Central Pacific Ocean - Fk160115 60m metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1674
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (75.00%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Photic Zone → Seawater → Marine Microbial Communities From The Costa Rica Dome And Surrounding Waters

Source Dataset Sampling Location

• Location Name: The Central Pacific Ocean
• Coordinates
  • Lat. (^o): 10.0
  • Long. (^o): -145.0
  • Depth (m): 60

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012583	Metagenome / Metatranscriptome	279	Y
F023620	Metagenome / Metatranscriptome	209	Y
F034959	Metagenome / Metatranscriptome	173	Y
F049045	Metagenome / Metatranscriptome	147	Y
F082798	Metagenome	113	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0160422_101041801	F049045	N/A	VAELVEKLLDFDGDEEISFYYLKDNILTNSRLEDINSYGMGIEFTIQDTHEFLEENS*
Ga0160422_101041802	F012583	GGAGG	MNTSEQIKIETFDKYVMRGGDQSLRNIEDLCDYGFNLVGLGYDPEVFNDVVIDVIRKLTGDLNS*
Ga0160422_101041803	F023620	AGGAG	MKTALFLSDYDLSTVHYLCSYYIDNANLDKEDIDYINELQSRVDKLMEVK*
Ga0160422_101041804	F034959	GGAGG	MKIEVNKEQLEILKYAILWYECNDKEEERIVDELEAKLYNAQEQDLLRSFTNMGGLQ*
Ga0160422_101041806	F082798	N/A	MSELSALKQAQYHLKELEGHIKDNKWYSHLYSHLAAVEGELQRQVETLEGTKVKIADNSPAGEIPETDRLYDVLELSTNGFFPPDNSYTSLSRVGASQKYESLLSQGVSPDSIKIVRVK*