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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300012919 Open in IMG/M |
| Scaffold ID | Ga0160422_10100463 Open in IMG/M |
| Source Dataset Name | Marine microbial communities from the Central Pacific Ocean - Fk160115 60m metaG |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 1706 |
| Total Scaffold Genes | 3 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 2 (66.67%) |
| Novel Protein Genes | 3 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (66.67%) |
| Associated Families | 3 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Maribacter → unclassified Maribacter → Maribacter sp. | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Oceanic → Photic Zone → Seawater → Marine Microbial Communities From The Costa Rica Dome And Surrounding Waters |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | The Central Pacific Ocean | |||||||
| Coordinates | Lat. (o) | 10.0 | Long. (o) | -145.0 | Alt. (m) | Depth (m) | 60 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F001656 | Metagenome / Metatranscriptome | 656 | Y |
| F016994 | Metagenome / Metatranscriptome | 243 | N |
| F022908 | Metagenome / Metatranscriptome | 212 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0160422_101004631 | F022908 | GAG | MPTHLDEAIKVILSSHSKLRDKTPRIYQLPKEEHMPKQFTNLKRMRFLNHDVSAGRNIKRWLWRDYHPEIILQQPPFDKYEDQSEIFTLIRNPQDRWWSGIKDMFYFLPWYAWWKNEKIMEQWPHFTRSTFRLHDVMQEVKPQHLIKCDNGLNQRIINFAKRHGLLCYGNIPFERPLRHTKPDIKKLEDKGVQTLKAWLRANPNRQKQLDEYLEPDWQYWEKVEYQE* |
| Ga0160422_101004632 | F001656 | AGGAG | MPITQNRSTNLTRRQSFNGKGLTFVEVIFAQSITASATTPESLDSVFDQVTKVVNRNGTLLAQSYRLAAKATDDDAAEAAEITADNSIDSYQYIVEGTPGQFNASDSVGDINMDVDATIVADAEADLEADIRSVISGDSAAGTIQVKVRTLLPEGHANGDASTFVGMFDQRGDA* |
| Ga0160422_101004633 | F016994 | N/A | GKELEFITIDAGEELANHLLKNETANAIENTVRQFGNIVGSGPLFDTNASRTYIVEGTDMFVGSPATTGTGAFTFTESGADGSSVGTLVTALKALGTIDGIDLNDSGTTAKIENLEL* |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |