Scaffold Ga0160422_10052096

Overview

Basic Information

• Taxon OID: 3300012919
• Scaffold ID: Ga0160422_10052096
• Source Dataset Name: Marine microbial communities from the Central Pacific Ocean - Fk160115 60m metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2380
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → unclassified viruses → Virus sp. (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Photic Zone → Seawater → Marine Microbial Communities From The Costa Rica Dome And Surrounding Waters

Source Dataset Sampling Location

• Location Name: The Central Pacific Ocean
• Coordinates
  • Lat. (^o): 10.0
  • Long. (^o): -145.0
  • Depth (m): 60

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000613	Metagenome / Metatranscriptome	985	Y
F002192	Metagenome / Metatranscriptome	585	Y
F063773	Metagenome / Metatranscriptome	129	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0160422_100520961	F063773	GGCGG	MAQEFVIKSQDIEDKINQLLPSQGGFQAGVDFSASTMVVPIIDLTET
Ga0160422_100520962	F000613	AGGAG	MPLVKKKLSIAAGATSDQVLAGTTYEYVDPGTRLVVAAAVDTAGTASADTLMDFTVNNAEFSKNASVSTLVNGEPFGWNGNYVMNDMVTTGQVRNRPVITFTNNTAATRTVDVAVFIGG*
Ga0160422_100520964	F002192	N/A	MIYLSSFIAVLALIIGLYACGRVAKVLNATKDLEWDAIANITGDLATTKKTIQTLNNRINGMHSPKIAEQELLMQLMQNKGQQHNGKVVGG*