Scaffold Ga0160422_10044275

Overview

Basic Information

• Taxon OID: 3300012919
• Scaffold ID: Ga0160422_10044275
• Source Dataset Name: Marine microbial communities from the Central Pacific Ocean - Fk160115 60m metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2582
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (33.33%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → unclassified viruses → Circular genetic element sp. (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Photic Zone → Seawater → Marine Microbial Communities From The Costa Rica Dome And Surrounding Waters

Source Dataset Sampling Location

• Location Name: The Central Pacific Ocean
• Coordinates
  • Lat. (^o): 10.0
  • Long. (^o): -145.0
  • Depth (m): 60

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001611	Metagenome / Metatranscriptome	663	N
F002374	Metagenome / Metatranscriptome	566	Y
F036730	Metagenome / Metatranscriptome	169	Y
F076162	Metagenome	118	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0160422_100442751	F036730	N/A	VAEYFINSQQLETKIRQSLPSQGGAEPGVDLSASTTIIPIIDLTETAEGSTLRQDLQSAFAFSNITEFNIS
Ga0160422_100442752	F001611	AGGAG	MPLVQKTIQLTAGSTSDNILANTNYEFIDGNVRVRVAAAADTAGTTETVDNKLNVSVNNAEYSKNASIPALVTGQPFSVLSGAYNMNDLTTTGAMRNRVLVQVTNDTAATRTYRIGVFIGG*
Ga0160422_100442754	F002374	N/A	MQTTKMDQILLYACAGGVLVTFFLCVYACARVGKLLNSVKGLDWDTVATLTGDIGTIKKSIQTLNNRINGLNSPKLNDELLRYAMKQQDNVTDIKKNLGG*
Ga0160422_100442756	F076162	N/A	VTGQPFSVLSGAYNMNDLTTTGAMRNRVLVQVTNDTAATRTYRIGVFIGG*