Scaffold Ga0160422_10043454

Overview

Basic Information

• Taxon OID: 3300012919
• Scaffold ID: Ga0160422_10043454
• Source Dataset Name: Marine microbial communities from the Central Pacific Ocean - Fk160115 60m metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2606
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (81.82%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Photic Zone → Seawater → Marine Microbial Communities From The Costa Rica Dome And Surrounding Waters

Source Dataset Sampling Location

• Location Name: The Central Pacific Ocean
• Coordinates
  • Lat. (^o): 10.0
  • Long. (^o): -145.0
  • Depth (m): 60

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004869	Metagenome / Metatranscriptome	420	Y
F013897	Metagenome / Metatranscriptome	267	Y
F029784	Metagenome / Metatranscriptome	187	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0160422_100434541	F004869	N/A	MTCDREHYYALHTFLKDDELHEIWNIVEKAMNREGYDVSNSELSMRLYDSELEENIEHDMENLLGSLSEGKDQPQPVDKAAHGHVRKDLDAL*
Ga0160422_100434543	F029784	AGGAG	MCSQIYSHPVEGYKCFANANKSQGTYYTCCDLDTREIRYVTYIYDGYFMGYYLVQSATKVAENFANCQDKIFLSSASNKWPYYKGNDDEYTIDRQYPMQYDIPSLDEVEYSYLDSLLTAGTSK*
Ga0160422_100434546	F013897	GAGG	MNLTKDQLLALMNTIDFATDNDASYEEYTIIKSGTSDLESIKEILYNEYIHQTQ*