Scaffold Ga0160422_10040058

Overview

Basic Information

• Taxon OID: 3300012919
• Scaffold ID: Ga0160422_10040058
• Source Dataset Name: Marine microbial communities from the Central Pacific Ocean - Fk160115 60m metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2716
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (72.73%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Photic Zone → Seawater → Marine Microbial Communities From The Costa Rica Dome And Surrounding Waters

Source Dataset Sampling Location

• Location Name: The Central Pacific Ocean
• Coordinates
  • Lat. (^o): 10.0
  • Long. (^o): -145.0
  • Depth (m): 60

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001479	Metagenome / Metatranscriptome	687	Y
F004869	Metagenome / Metatranscriptome	420	Y
F007756	Metagenome / Metatranscriptome	345	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0160422_100400584	F007756	N/A	MKQLNTLKRYYVNVKFEKYGTYTIEARSKEHALEIYNDGNYGWDDYTEDFGEFNEVVEDVEEELFADTQLTLSGVLA*
Ga0160422_100400588	F004869	GGAG	MSCNSEHYYAVQTFLDDDELCKIWNIIEIAMNREGYDVENAELSMRLYDSELEETIEHDMENLLGSLSEGKDVDYGSKVDALVDSMGVTDQEVSQVHKRRDLDRL*
Ga0160422_100400589	F001479	AGGAG	MSKEMLFLCDVYDLWLEENNLPHRCASDILHSSDTMNRLTPNQTYWLESFISTWDVISQNT*