Scaffold Ga0160422_10032720

Overview

Basic Information

• Taxon OID: 3300012919
• Scaffold ID: Ga0160422_10032720
• Source Dataset Name: Marine microbial communities from the Central Pacific Ocean - Fk160115 60m metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3011
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (50.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Photic Zone → Seawater → Marine Microbial Communities From The Costa Rica Dome And Surrounding Waters

Source Dataset Sampling Location

• Location Name: The Central Pacific Ocean
• Coordinates
  • Lat. (^o): 10.0
  • Long. (^o): -145.0
  • Depth (m): 60

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004869	Metagenome / Metatranscriptome	420	Y
F009691	Metagenome / Metatranscriptome	314	Y
F013094	Metagenome / Metatranscriptome	274	Y
F023367	Metagenome / Metatranscriptome	210	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0160422_100327202	F004869	GGAG	MSYDREHYYAVQSFLEDDELCKIWNIIEIAMNREGYDVENAELSMRLYDSELTEDIHHDYLADYLDSQSEGKDYDITLSTDDDYGSKVDALVDSMSVTDKEVTTTHRRRDLDSL*
Ga0160422_100327205	F009691	AGGA	MKSTLNSKDYVAFARRFVKETVATMDIEELRSLVTNQIHEEIQEGENEFGQSGAFDEMIAWNEDVFLSVAEDFELEFEGV*
Ga0160422_100327206	F023367	AGGAG	MKKFVFTEKFISYADVEIYAENEENARLQFQNGNYQYYDVSDFTDGHELIEVKEVTE*
Ga0160422_100327207	F013094	AGGAGG	VITAFFTGVVVAIPTSLLAMKLLNSSLFIDNQELRHINEKISIVIHQIDEYREERLAEKEGIK*