Scaffold Ga0160422_10032354

Overview

Basic Information

• Taxon OID: 3300012919
• Scaffold ID: Ga0160422_10032354
• Source Dataset Name: Marine microbial communities from the Central Pacific Ocean - Fk160115 60m metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3028
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (45.45%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Photic Zone → Seawater → Marine Microbial Communities From The Costa Rica Dome And Surrounding Waters

Source Dataset Sampling Location

• Location Name: The Central Pacific Ocean
• Coordinates
  • Lat. (^o): 10.0
  • Long. (^o): -145.0
  • Depth (m): 60

Associated Families

Family	Category	Number of Sequences	3D Structure?
F029713	Metagenome	187	Y
F033766	Metagenome	176	Y
F036656	Metagenome / Metatranscriptome	169	Y
F088743	Metagenome	109	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0160422_100323543	F033766	AGGAGG	MSDYPYNLTAIATHLRELAQSIAKKLDISEQDAMDLCIEKLESKYLHMTREDNNDSMS*
Ga0160422_100323545	F036656	AGG	MYGVFKMKLCTNQSIPCEYLKGACIFLSDEDEGRYIKDVCVDLEKHSIILIDDDGNGMYWESLRNASIQFQGGR*
Ga0160422_100323546	F088743	N/A	MKTKIKDHEQAYLHALVLAITAPDEALSKECIQMAESIGLQLTEKQRDLCRKGVEVCMEYLK*
Ga0160422_100323547	F029713	AGGAGG	MTSDKYDYEKELKAAKRAEIERIWFAQEATNKELLEAYKALDIKENKEPS*