Scaffold Ga0160422_10030194

Overview

Basic Information

• Taxon OID: 3300012919
• Scaffold ID: Ga0160422_10030194
• Source Dataset Name: Marine microbial communities from the Central Pacific Ocean - Fk160115 60m metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3136
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (12.50%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Photic Zone → Seawater → Marine Microbial Communities From The Costa Rica Dome And Surrounding Waters

Source Dataset Sampling Location

• Location Name: The Central Pacific Ocean
• Coordinates
  • Lat. (^o): 10.0
  • Long. (^o): -145.0
  • Depth (m): 60

Associated Families

Family	Category	Number of Sequences	3D Structure?
F030401	Metagenome	185	Y
F043348	Metagenome	156	N
F072256	Metagenome	121	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0160422_100301945	F043348	N/A	MSCTLADKNRRKKMLRSQLAGINDPFELLAEVIADNERLRQFINNHDCHKGKP*
Ga0160422_100301947	F030401	GGA	MESLFGNSAKATLQKMVKKGLLKVSDLDTPTEGWFIAMGYERETGTGKWKRLLRTKSGATPSLRLENIPKWKNTLTGKITFDPVEYEKQN*
Ga0160422_100301948	F072256	N/A	MKSKIKDILVQDPFLQFLPEPHKYYDLKRKKYVARSVSEVVKENTYVSKEMEKAAIRGTAIHEAVQIWCETKDKTLALAYAKDYAHWIEHLINYRMWETWDCVANELRMVDRKRDIAGSCDVILQHKDTGMLCLADFKTQEVYKKKNHRLQMGGYVSLLYQNYPGVDLWSCRVIYITPDGIKTQDYNP