Scaffold Ga0160422_10019685

Overview

Basic Information

• Taxon OID: 3300012919
• Scaffold ID: Ga0160422_10019685
• Source Dataset Name: Marine microbial communities from the Central Pacific Ocean - Fk160115 60m metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3922
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (45.45%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Photic Zone → Seawater → Marine Microbial Communities From The Costa Rica Dome And Surrounding Waters

Source Dataset Sampling Location

• Location Name: The Central Pacific Ocean
• Coordinates
  • Lat. (^o): 10.0
  • Long. (^o): -145.0
  • Depth (m): 60

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004869	Metagenome / Metatranscriptome	420	Y
F007756	Metagenome / Metatranscriptome	345	Y
F009691	Metagenome / Metatranscriptome	314	Y
F013094	Metagenome / Metatranscriptome	274	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0160422_100196852	F004869	GGAG	MTCDREHYYALHTFLEDDELHNIWDIVEKAMNRHGFDVSNSELSMRLYDEELEEDIHHDYLADYLDSQSEGKDYDITLSTDDDYGSKVDALVDSMSVTDEKVTTTHRRRDLDTL*
Ga0160422_100196854	F007756	N/A	MKQLNTLKRYYVNVKFEKYGTYTIEARSKEHALEIYNDGDYGWSDYSEDFGEFNEVVEDVEEELFADTQLTLSGV*
Ga0160422_100196855	F009691	AGG	MSMKSTLNSKDYVTFARRFVKETVATMDIEELRSLVTNQIHEEIQEGENEFGQSGAFDEMIAWNEDVFLSVAEDFDLEFEGV*
Ga0160422_100196856	F013094	GGAG	MITAFFTGVIVAIPTSLVTMKLLNSSLFIDNQELRHINEKISIVIHQLDDYREERLAEKYGGEDGNITLKVSE*