Scaffold Ga0160422_10013154

Overview

Basic Information

• Taxon OID: 3300012919
• Scaffold ID: Ga0160422_10013154
• Source Dataset Name: Marine microbial communities from the Central Pacific Ocean - Fk160115 60m metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4875
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (42.86%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Siphoviridae → unclassified Siphoviridae → Cyanophage MED4-117 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Photic Zone → Seawater → Marine Microbial Communities From The Costa Rica Dome And Surrounding Waters

Source Dataset Sampling Location

• Location Name: The Central Pacific Ocean
• Coordinates
  • Lat. (^o): 10.0
  • Long. (^o): -145.0
  • Depth (m): 60

Associated Families

Family	Category	Number of Sequences	3D Structure?
F048928	Metagenome	147	Y
F085581	Metagenome	111	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0160422_1001315412	F048928	N/A	MAYENIFTGRLVLFDNNDKKSEKSPDFGGNIEFTLSDAMALTEWITAQEGEENYAGEKVVKIPVSAWNRMSKNGSSFVSGSISVLKTEKEEMPF*
Ga0160422_1001315413	F085581	N/A	MTKVLRKVSNPKLPPNVKVFQDHLALGLECFDLDWFDFRPHTCNNKQYGDGILFSQLDNSHGEKLSAEHSLIVSNEGLHLADQKIMPFSNEQPPTKMAMLVLSAMVLKQPLQFQCPDCD*