Scaffold Ga0160422_10007975

Overview

Basic Information

• Taxon OID: 3300012919
• Scaffold ID: Ga0160422_10007975
• Source Dataset Name: Marine microbial communities from the Central Pacific Ocean - Fk160115 60m metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6362
• Total Scaffold Genes: 15
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (33.33%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Photic Zone → Seawater → Marine Microbial Communities From The Costa Rica Dome And Surrounding Waters

Source Dataset Sampling Location

• Location Name: The Central Pacific Ocean
• Coordinates
  • Lat. (^o): 10.0
  • Long. (^o): -145.0
  • Depth (m): 60

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006793	Metagenome	364	Y
F016820	Metagenome	244	Y
F037769	Metagenome	167	N
F087060	Metagenome	110	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0160422_1000797514	F087060	N/A	MTQSHTTSNDTSAKQVVRTLSGITKGKPIVTGDAPQTKKFDPVADQDNRLMQMLELSLAIKDKKSEYDDLRKSFMNDLKAALDDNEENPKIRHSENERVHVYLSKRRVYKYSDKLTAKRLKLEAQMADLKDEEAKEVRHNKAELTKETFTVSFKG*
Ga0160422_100079756	F006793	GAG	MTNTRSNNQQMEERVNYAADQLAKGKRAMDISKKLASKYNVSIQQARDYVRQAKPVLTQSISPNDRAFIFSKVMSCLEQDRLDARDQENLKEQTRSTGGMVKMVSLLTSIDQVGSWDSARESEGDYLFRNFSEIAKKRKKKYGDLDALDNTDIPF*
Ga0160422_100079757	F016820	N/A	MTKKEFSYIVFSKAGDNVQEIVGVYKDLDGAAYGAKAALATLFPNHGDKAEIIRCEIISTEEARVTYEKTKPKDIFEKCEDGFCPMPTPQTQEVS*
Ga0160422_100079759	F037769	N/A	MNILKRKLMSYIQTQTDKEDEKLLRKLLSEKMPEKDADKIISHVFSNLIKWTYEDAVLHLTQVFNFTEEECNRLIKEYDILSSTTKEVIMNPPPNFNATAPNDVKDYSANLWQARKCLSDAKKLINATALTPRDYENDEDFHEALLYRLHIAENFVNINKYIDEHLDFAKAHIPPQTP*