Scaffold Ga0160422_10006850

Overview

Basic Information

• Taxon OID: 3300012919
• Scaffold ID: Ga0160422_10006850
• Source Dataset Name: Marine microbial communities from the Central Pacific Ocean - Fk160115 60m metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6911
• Total Scaffold Genes: 17
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (58.82%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Photic Zone → Seawater → Marine Microbial Communities From The Costa Rica Dome And Surrounding Waters

Source Dataset Sampling Location

• Location Name: The Central Pacific Ocean
• Coordinates
  • Lat. (^o): 10.0
  • Long. (^o): -145.0
  • Depth (m): 60

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005611	Metagenome	395	Y
F025970	Metagenome	199	Y
F060421	Metagenome	133	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0160422_1000685012	F025970	N/A	MSNTDMFLDIAKNINNASQSSSRHGKLFALRDLLTEINTLKDIDTATKLKIKILIEGKINGIKKDIKNNQQFEDPFLDKM*
Ga0160422_100068506	F005611	GAGG	MKTYKVTAGETIYAVYETEVRAKNKKEAEKIASEISAYDYKSNDWSNSAGDFAIEEIEEVI*
Ga0160422_100068509	F060421	GGA	MFNIFYEHYKKRDGAIYKDLAYYNHKDRIKMLNNFILNCMDSTERITSDKKLYKQYKSFIKANKRAIRFYCRLKKFCNKNKHIKGFVQDV*