Scaffold Ga0160422_10003740

Overview

Basic Information

• Taxon OID: 3300012919
• Scaffold ID: Ga0160422_10003740
• Source Dataset Name: Marine microbial communities from the Central Pacific Ocean - Fk160115 60m metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 9413
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (21.43%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Photic Zone → Seawater → Marine Microbial Communities From The Costa Rica Dome And Surrounding Waters

Source Dataset Sampling Location

• Location Name: The Central Pacific Ocean
• Coordinates
  • Lat. (^o): 10.0
  • Long. (^o): -145.0
  • Depth (m): 60

Associated Families

Family	Category	Number of Sequences	3D Structure?
F034139	Metagenome	175	Y
F036706	Metagenome	169	Y
F062838	Metagenome	130	N
F099140	Metagenome	103	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0160422_1000374012	F034139	N/A	MSDMNLEQIYKTLKDFVEKEEDLQCKWPCDSDYNVPTWDKIYDALDILDSIINYEPSDAELESYFNDYQDPPHVRNQKMLEMKSESHGRNHNIPFNY*
Ga0160422_100037402	F036706	N/A	MPYFRSSLGIVFPKNPHINQVYYDVDLKRTFRYEEKPSMAILINSTTDWCHWVDITDKDLV*
Ga0160422_100037403	F099140	N/A	MTTKKLYKIKTKSILYEVFEIEAESYDKALDSIMPTIYDGTDDYPVDVERVGWWFDGMGKSILDKDDEHKGLFGIPITIEEYDKTPEWQIVKPQGCFPGDFREPTEEEWVADEKQAIADGRIVKESVTLKFAHCPEY*
Ga0160422_100037406	F062838	N/A	MILMRQTKVIIYCHKERKNSPIASVRYTKYDDLDRVVDVEQVDYEDTQYFHSEVLQAIQLGIDVLIYTELDGNLLQRKIEHWT*