Scaffold Ga0160422_10003667

Overview

Basic Information

• Taxon OID: 3300012919
• Scaffold ID: Ga0160422_10003667
• Source Dataset Name: Marine microbial communities from the Central Pacific Ocean - Fk160115 60m metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 9510
• Total Scaffold Genes: 16
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 13 (81.25%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Photic Zone → Seawater → Marine Microbial Communities From The Costa Rica Dome And Surrounding Waters

Source Dataset Sampling Location

• Location Name: The Central Pacific Ocean
• Coordinates
  • Lat. (^o): 10.0
  • Long. (^o): -145.0
  • Depth (m): 60

Associated Families

Family	Category	Number of Sequences	3D Structure?
F039881	Metagenome	163	N
F047994	Metagenome	149	Y
F061371	Metagenome	132	Y
F063188	Metagenome	130	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0160422_1000366712	F063188	AGGA	MKEKKETKTDITQRSDGMWIVDAKLSAVRIGLQDKEFVKRGHNLDYKLWITCFVAKSKKACVDWQRNNMDYLDRLSQKYSVNVKQYKQSIG*
Ga0160422_1000366713	F039881	GGAG	MARPNKLFKETMSYNLTIEKKDYEELKNFSTKESDTFNMQVSIADLIRTSVKLYIEDLRKEYERKERDKN*
Ga0160422_100036675	F061371	AGG	MKTLTDIETQIDALKEVSSNALLKHGFSRSRQRIFDLSKSLDQSWQNYKVIHGRTYYKELCLFVICRSASGLRYKSIVKRSGLNGVVVHDAITELLKDKLIYTKSIFSNRNAKVKLLYCARKK*
Ga0160422_100036679	F047994	N/A	MNDKVFDFINDRWFEMSVDDFKDWLKTHRETDMVAKVVHDNLDSLEEKWKQEKLDSYPYV