Scaffold Ga0137396_10005554

Overview

Basic Information

• Taxon OID: 3300012918
• Scaffold ID: Ga0137396_10005554
• Source Dataset Name: Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czcobulk3.16 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7330
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (100.00%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil → Vadose Zone Soil And Rhizosphere Microbial Communities From The Eel River Critical Zone Observatory, Northern California To Study Diel Carbon Cycling

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 39.7291
  • Long. (^o): -123.6419

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003305	Metagenome / Metatranscriptome	494	Y
F012334	Metagenome	281	Y
F015579	Metagenome / Metatranscriptome	253	Y
F017278	Metagenome	241	N
F097102	Metagenome / Metatranscriptome	104	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0137396_100055542	F003305	AGG	MRDLATWEEPRELDTDNEAVISLYDGIKKILEKQPKPKAKPSSGLPREAKHILRCGRILKVDIERKLVVITVMKTDGELHQLRIEANQD*
Ga0137396_100055545	F015579	GGGGG	LGSDSKKPPRPKHRFNFSGQNKQPLGSSTTRATNVTKDDILKSLTKHAHPLEPEEATSETEQAVQLQETNRTTARVPARDRGSARGALVIFLGGFLAVWIYGYVTGAYEIPYLRGVTESPEVKAGVQLVSSNPILSSAVAVSILLGVLFLRHRKKI*
Ga0137396_100055546	F097102	AGG	LEIEVYNCGCKVRIYEVEFGESRNDLTERPSLISDYSPCTKHRNARRIPPQGARLLKVMGEHEAFLNE*
Ga0137396_100055547	F012334	GGA	MSSKRPVELGRDARLFLLLLSEINLIMGALFFVYPSSVIGLWPWSVKALAVRFIGAIFLAIAFGCWSALRARIWQRAKILVLVGGTFFGITSIVSTVLTASQGGGYAISAWTGYFLIASIGNFHLLNRYRWPRKLQDRLGPGQPWKTARWFFRIQTVIVGVFGMMMLLLPDVAQHQFWPWLVATPTLQTFSGLFLATCLATGWASRQTDTGRIRVLLPLDVIFPSLALLAVGIHWDVISSQSPSSLVTGVWVFIYAFVAIGSVYLYFFSRKPATT*
Ga0137396_100055549	F017278	GAG	MKLFKFEALSSHESCPKAEMSEKKNMRDEVRREAKEALEAMRKDLQQLSKDLVVASKTLKTSTEKFVQDTGPKVSAGLEETVETFRRTMTTIDKQTKPQQSKLLRTYKKFLTKQVDFIEKRLKQTE*